Bradford E. Peercy

• Postdoc in Computational and Applied Mathematics, Rice University, Houston, TX

Postdoctoral Advisor: Steven J. Cox

• Ph.D. in Mathematics, December 2003, University of Utah, Salt Lake City, UT

Dissertation Title: Models of Border Zone Arrhythmias in Acute Cardiac Ischemia
Advisor: Prof. James P. Keener

• M.S. in Mathematics, 1997, University of Utah, Salt Lake City, UT

• B.A. in Mathematics, 1995, Trinity University, San Antonio, TX

2003-pres.:	Pfeiffer-VIGRE Postdoctoral Associate, Rice University
2002-2003:	Research Assistant, University of Utah
2001-2002:	Research Assistant, CVRTI (Cardiovascular Research and Training Institute), University of Utah
1999-2001:	Research Assistant, University of Utah
1999-2001:	Teaching Fellow, University of Utah
1999 summer:	Mathematical Physiology - PIMS Workshop, June 14-25
1998-1999:	Teaching Assistant, University of Utah
1998 summer:	Mathematical modeling in industry - IMA Summer program

Publications

1. Calcium Wave Initiation and Evolution in a Neuron , Bradford E. Peercy, in preparation.
2. A Kinetic Model of Oxygen Regulation of Cytochrome Production in Escherichia coli , Bradford E. Peercy, Steven J. Cox, Sagit Shalel-Levanon, Ka-Yiu San, George Bennett, in revision for Journal of Theoretical Biology.
3. Development of a metabolic network design and optimization framework incorporating implementation constraints: a succinate production case study, S.J. Cox, S.S. Levanon, A. Sanchez, H. Lin, B. Peercy, G.N. Bennett and K-Y. San, Metabolic Engineering, vol. 8, (2006), p. 46-57.
4. A Partial Differential Equation Model for Cardiac Ischemic Border Zone , Bradford E. Peercy, J.P. Keener, in preparation.
5. Coupled Cell Model of Border Zone Arrhythmias, Bradford E. Peercy, J.P. Keener, SIAM Journal of Applied Dynamical Systems, (2005) Vol 4, Num. 3, pp. 679-710.
6. Intrinsic H⁺ Ion Mobility in the Rabbit Ventricular Myocyte, R.D. Vaughn-Jones, B. E. Peercy, J.P. Keener, K.W. Spitzer, Journal of Physiology, (2002) 541.1, pp. 139-158.
7. Facilitation of Intracellular H⁺ Ion Mobility by CO₂/HCO^-₃ in Rabbit Ventricular Myocytes Is Regulated by Carbonic Anhydrase , K.W. Spitzer, R.L. Skolnick, B.E. Peercy, J.P. Keener, R.D. Vaughn-Jones,
   Journal of Physiology, (2002) 541.1, pp. 159-167.
8. Boundary Element Analysis of Intracardiac Electrogram Sensing, J. Alford, N. Cogan, C. Miller, S. Patinkin, B.E. Peercy, N. A. Rosenberg, IMA Preprint Series #1589-3, October 1998.

• Invited Talk, Third Annual Gulf Coast Consortia on Theoretical Neuroscience, Rice University (November 2005) Calcium Wave Initiation and Evolution in a Neuron, Bradford E. Peercy

• Invited Talk, Geometry and Analysis Seminar, Mathematics Department, Rice University (August 2005) A Model for Calcium Wave Initiation in a Neuron, Bradford E. Peercy

• Contributed Talk, Society of Mathematical Biology Annual Meeting, Dresden, Germany (July 2005) Calcium Signaling in a Neuron, Bradford E. Peercy

• Poster, Society of Mathematical Biology Annual Meeting, Dresden, Germany (July 2005) Oxygen Sensor/Regulators' Effects in Escherichia coli, Bradford E. Peercy, Sagit Shalel-Levanon, George N. Bennett, Steve Cox, Ka-Yiu San.

• Invited Talk, SIAM Annual Meeting, New Orleans (July 2005) Ischemia induced cardiac border zone arrhythmias, Bradford E. Peercy, James P. Keener

• Invited Talk, Applied Mathematics Seminar, Texas A&M (May 2005) A Mechanism of Calcium Wave Initiation in a Neuron, Bradford E. Peercy, Steve Cox, Jane Hartsfeld

• Department Colloquium, Computational and Applied Mathematics Department, Rice University (April 2005) Analysis of Calcium Wave Initiation in a Neuron, Bradford E. Peercy, Steve Cox, Jane Hartsfield

• Poster, First Annual Young Researchers Conference, Mathematical Biosciences Institute, Ohio State University (March 2005) Calcium Signaling in a Neuron, Bradford E. Peercy, Jane Hartsfield, Steve Cox

• Graduate Colloquium, Computational and Applied Mathematics Department, Rice University (March 2005) Stability of Steady Solutions of Inhomogeneous Diffusion Reaction Equations in the Context of Cardiac Models, Bradford E. Peercy, James P. Keener

• Contributed Talk, Houston Society of Engineering and Molecular Biology (February 2005) Mathematical Model of Oxygen Sensing in Escherichia Coli, Bradford E. Peercy, Sagit Shalel-Levanon, George N. Bennett, Steve Cox, Ka-Yiu San.

• Poster, Coupled 60, University of Houston (February 2005) A Quantitative Model of Neuronal Calcium Signaling, J. Hartsfield, Bradford E. Peercy, S. Cox

• Poster, Annual AIChE meeting, Austin, Texas (November 2004) Modeling of the oxygen sensing/regulatory circuit and metabolism in E. coli, Bradford E. Peercy, S. Cox, S. Shalel Levanon, G. N. Bennett, and K.-Y. San.

• Poster, Annual AIChE meeting, Austin, Texas (November 2004) A practical metabolic network design and optimization framework to guide pathway reconstruction, S. Cox, H. Lin, A.M. Sanchez, Bradford E. Peercy, S. Shalel Levanon, G. N. Bennett, and K.-Y. San.

• Poster, Society for Neuroscience Conference, San Diego, California (October 2004) A Quantitative Model of Neuronal Calcium Signaling, J. Hartsfield, Bradford E. Peercy, S. Cox.

• Poster, Metabolic Engineering Conference (September 2004) A Genetic network driven metabolic flux analysis scheme, K.-Y. San, G.N. Bennett, S. Shalel Levanon, S. Cox, Bradford E. Peercy, J. V. Shanks, and R. Gonzalez.

• Contributed Talk, Society of Mathematical Biology Annual Meeting, University of Michigan (July 2004) Calcium Signaling in a Neuron, Bradford E. Peercy, S. Cox, J. Hartsfield.

• Poster, Gordon Research Conference on Theoretical Biology and Biomathematics, Tilton School (June 2004) Oxygen Sensing and Regulation of Cytochromes in E. coli, Bradford E. Peercy, S. Cox, S. Shalel Levanon, G. N. Bennett, and K.-Y. San.

• Poster, American Chemical Society Conference, Philadelphia, Pennsylvania (April 2004) Modeling of the Oxygen Sensing/Regulatory Circuit in E. coli, Bradford E. Peercy, K.Y. San, G.N. Bennett, S. Shalel-Levanon, S. Cox.

• Invited TalkVIGRE Seminar, Tulane University (April 2004)Dynamics at the Border Zone: A Coupled Cell Model of Cardiac Ischemia, Bradford E. Peercy, James P. Keener.

• Department Colloquium, Computational & Applied Mathematics Department, Rice University (May 2003) Modeling Border Zone Arrhythmias , Bradford E. Peercy, James P. Keener.

• Undergraduate Colloquium, University of Utah (November 2002) Experimentation with Acid , Bradford E. Peercy, James P. Keener, Kenneth Spitzer, Richard Vaughn-Jones

• Graduate Colloquium, University of Utah (September 2002) Dropping Acid: Quantification of Hydrogen Movement in Cardiac Cells , Bradford E. Peercy, James P. Keener, Kenneth Spitzer, Richard Vaughn-Jones.

• Contributed Talk, Society of Mathematical Biology Annual Conference, Knoxville, Tennessee (July 2002) A Model of Ischemic Border Zone Arrhythmias in Cardiac Tissue, Bradford E. Peercy, James P. Keener.

• Invited Talk, Math Biology Seminar, University of Utah (May 2002) A Model of Border Zone Arrhythmias, Bradford E. Peercy, James P. Keener

• Graduate Colloquium, University of Utah (October 2001) Some basics of bifurcation theory and an application of a Hopf bifurcation in cardiac arrhythmias , Bradford E. Peercy.

• Poster, SIAM-Life Science Conference, Boston, Massachusetts (September 2001) How Ischemia Causes Cardiac Arrhythmias , Bradford E. Peercy, James P. Keener.

• Poster, Society of Mathematical Biology Annual Conference, Hilo, Hawaii (July 2001) Cardiac Ischemia Border Zone Arrhythmias , Bradford E. Peercy, James P. Keener.

• Graduate Colloquium, University of Utah (January 2000) Excitable Media: Qualitative Behavior , Bradford E. Peercy.

• Invited Talk, Major's Seminar, Trinity University (November 1999) Excitable Media: Qualitative Behavior , Bradford E. Peercy.

• Undergraduate Colloquium, University of Utah (October 1999) Excitable Media: Qualitative Behavior , Bradford E. Peercy.

• 2003-pres. PFUG Contributor and Mentor, Rice University VIGRE (NSF) program, biomath research group. Duties: Co-organize multiple research groups (metabolic engineering, neuroscience) involving postdocs, faculty, undergraduate and graduate students; Mentor undergrad and grad student research; Consult on presentations.
• 2001-2003 Supplemental Instruction (SI) Supervisor, University of Utah,
  Duties: Interview and hire undergraduate SI session leaders; Organize and run leader training workshop; Supervise, observe, and evaluate two leaders.

Rice University

• Theoretical Neuroscience (CAAM 415) S06
  http://www.caam.rice.edu/~caam415
• Dynamical Systems: Theory and Computation (CAAM 435) S05
  http://www.caam.rice.edu/~bpeercy/caam435
• Introduction to Engineering Computation (CAAM 210) S04, F04, F05
  http://www.owlnet.rice.edu/~caam210
• Dynamical Systems Lab (CAAM 469/MATH 468 LAB) F03
  http://www.caam.rice.edu/~bpeercy/math468

  University of Utah

• Introduction to Differential Equations (Math 2250) Su03
  http://www.math.utah.edu/~bpeercy/math2250/frame.htm
• Introduction to Quantitative Analysis (Math 1030) Su99, F99, S00
  http://www.math.utah.edu/~bpeercy/math1030/frame.htm
• College Algebra for Business and Social Sciences (Math 1090) F00
  http://www.math.utah.edu/~bpeercy/math1090/frame.htm
• Quantitative Analysis: Business Calculus (Math 1100) S01
  http://www.math.utah.edu/~bpeercy/math1100/frame.htm
• Maple Computer Lab: Calculus for Life Scientists, F98
  Duties: Assist students with computer and content questions.

• Co-Chair, Graduate Student Advisory Committee (GSAC), Dept. of Mathematics, University of Utah, 2000-2001
• Organizer, Graduate Student Recruitment Weekend, Dept. of Mathematics, University of Utah, 2001
• Member, GSAC, Dept. of Mathematics, University of Utah, 1998-2002
• Teacher Trainer and Facilitator, Center for Teaching and Learning Excellence, University of Utah Campus-Wide Teacher Assistant Training, 1999.

• SMB (Society for Mathematical Biology)
• SIAM (Society for Industrial and Applied Mathematics)
• AMS (American Mathematical Society)

• Pfeiffer Endowment award 2003-pres.
• NSF VIGRE postdoctoral fellowship, Rice University, 2003-pres.
  
• Society of Mathematical Biology Travel Award to Annual Conference, Dresden, Germany, 2005
• Society of Mathematical Biology Travel Award to Annual Conference, Hilo, HI, 2001
• Graduate School Travel Award, University of Utah, 2001
• Teaching Fellowship, University of Utah, 1999-2001
• Recruitment Travel Award, University of Utah, 1999
• Teaching Assistantship, University of Utah, 1998-1999
• Presidential Scholarship, Trinity University, 1991-1992

• Bulletin of Mathematical Biology

• Matlab, Maple, Latex, HTML, UNIX, Fortran

• Steven J. Cox (Postdoctoral Advisor)
  Computational and Applied Mathematics
  Rice University
  6100 Main St. MS 134
  Houston, TX 77005
  

• James P. Keener (Graduate Advisor)
  Department of Mathematics
  University of Utah
  155 South 1400 East
  Salt Lake City, Utah 84112
  

• William W. Symes (Department Chair at hiring - Teaching Evaluator)
  Computational and Applied Mathematics
  Rice University
  6100 Main St. MS 134
  Houston, TX 77005
  

• Ka-Yiu San (Interdisciplianry Collaborator)
  Bioengineering
  Rice University
  6100 Main St. MS 142
  Houston, TX 77005
  

• Richard A. Tapia (Co-Advisor for Graduate Student)
  Computational and Applied Mathematics
  Rice University
  6100 Main St. MS 134
  Houston, TX 77005